where is the ROI Picker?

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where is the ROI Picker?

Aryeh Weiss
I cannot find the ROI Picker ( https://imagej.net/ROI_Picker ) in my Fiji.

I know it is there because the Grid/Collection stitching plugin uses it.

I am interested in using it without first  stitching something,an dit
must be there, but my Find command utility doe snot find it, and I do
not see it in the list of tools.

I must be missing something obvious. Can someone tell me where to find
it and how to put it into the toolbar?

Thanks in advance.

--aryeh

--
Aryeh Weiss
Faculty of Engineering
Bar Ilan University
Ramat Gan 52900 Israel

Ph:  972-3-5317638
FAX: 972-3-7384051


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Re: where is the ROI Picker?

Aryeh Weiss
On 09/03/2017 12:18, Aryeh Weiss wrote:
>
> I cannot find the ROI Picker ( https://imagej.net/ROI_Picker ) in my Fiji.
>
> I know it is there because the Grid/Collection stitching plugin uses it.
>
I took the source on github
https://github.com/fiji/Stitching/blob/master/src/main/java/tools/RoiPicker.java
put it in the macros/tools directory, and compiled it.
Sure enough, I have the tool. (Interesting --no class file is created in
that directory. Why?)

The problem is that I have to compile it  every time I start Fiji.

So what is  the  correct  way to do this?

--aryeh

> I am interested in using it without first  stitching something,an dit
> must be there, but my Find command utility doe snot find it, and I do
> not see it in the list of tools.
>
> I must be missing something obvious. Can someone tell me where to find
> it and how to put it into the toolbar?
>
> Thanks in advance.
>
> --aryeh
>
> --
> Aryeh Weiss
> Faculty of Engineering
> Bar Ilan University
> Ramat Gan 52900 Israel
>
> Ph:  972-3-5317638
> FAX: 972-3-7384051
>


--
Aryeh Weiss
Faculty of Engineering
Bar Ilan University
Ramat Gan 52900 Israel

Ph:  972-3-5317638
FAX: 972-3-7384051


--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html
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Re: where is the ROI Picker?

ctrueden
Hi Aryeh,

> The problem is that I have to compile it  every time I start Fiji.

You can activate the tool manually using the following Groovy script:

  ij.IJ.runPlugIn(tools.RoiPicker.class.getName(), "")

I tried doing this, and then playing around on Blobs after analyzing
particles, but I was unable to make the tool do anything.

I know I have seen it working when activated by the Stitching plugin. So
I'm not sure what's different here.

Suggestions welcome on how to better package this with Fiji. But I have
zero time to mess around with it on my own right now...

Regards,
Curtis

--
Curtis Rueden
LOCI software architect - https://loci.wisc.edu/software
ImageJ2 lead, Fiji maintainer - https://imagej.net/User:Rueden
Did you know ImageJ has a forum? http://forum.imagej.net/


On Thu, Mar 9, 2017 at 7:24 AM, Aryeh Weiss <[hidden email]> wrote:

> On 09/03/2017 12:18, Aryeh Weiss wrote:
>
>>
>> I cannot find the ROI Picker ( https://imagej.net/ROI_Picker ) in my
>> Fiji.
>>
>> I know it is there because the Grid/Collection stitching plugin uses it.
>>
>> I took the source on github
> https://github.com/fiji/Stitching/blob/master/src/main/java/
> tools/RoiPicker.java
> put it in the macros/tools directory, and compiled it.
> Sure enough, I have the tool. (Interesting --no class file is created in
> that directory. Why?)
>
> The problem is that I have to compile it  every time I start Fiji.
>
> So what is  the  correct  way to do this?
>
> --aryeh
>
>
> I am interested in using it without first  stitching something,an dit must
>> be there, but my Find command utility doe snot find it, and I do not see it
>> in the list of tools.
>>
>> I must be missing something obvious. Can someone tell me where to find it
>> and how to put it into the toolbar?
>>
>> Thanks in advance.
>>
>> --aryeh
>>
>> --
>> Aryeh Weiss
>> Faculty of Engineering
>> Bar Ilan University
>> Ramat Gan 52900 Israel
>>
>> Ph:  972-3-5317638
>> FAX: 972-3-7384051
>>
>>
>
> --
> Aryeh Weiss
> Faculty of Engineering
> Bar Ilan University
> Ramat Gan 52900 Israel
>
> Ph:  972-3-5317638
> FAX: 972-3-7384051
>
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

--
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Re: where is the ROI Picker?

Aryeh Weiss
Hi Curtis

Thanks for your reply.

On 14/03/2017 20:50, Curtis Rueden wrote:

> Hi Aryeh,
>
> > The problem is that I have to compile it  every time I start Fiji.
>
> You can activate the tool manually using the following Groovy script:
>
>   ij.IJ.runPlugIn(tools.RoiPicker.class.getName(), "")
>
> I tried doing this, and then playing around on Blobs after analyzing
> particles, but I was unable to make the tool do anything.
>
The strange thing is that when I compiled and ran the source from
github. it actually functioned.
However, now I cannot repeat that. Instead, when I compile i, it does
nothing (other than install the tool), just like when run the groovy script.

Best regards,
--aryeh

> I know I have seen it working when activated by the Stitching plugin.
> So I'm not sure what's different here.
>
> Suggestions welcome on how to better package this with Fiji. But I
> have zero time to mess around with it on my own right now...
>
> Regards,
> Curtis
>
> --
> Curtis Rueden
> LOCI software architect - https://loci.wisc.edu/software
> ImageJ2 lead, Fiji maintainer - https://imagej.net/User:Rueden 
> <https://imagej.net/User:Rueden>
> Did you know ImageJ has a forum? http://forum.imagej.net/
>
>
> On Thu, Mar 9, 2017 at 7:24 AM, Aryeh Weiss <[hidden email]
> <mailto:[hidden email]>> wrote:
>
>     On 09/03/2017 12:18, Aryeh Weiss wrote:
>
>
>         I cannot find the ROI Picker ( https://imagej.net/ROI_Picker )
>         in my Fiji.
>
>         I know it is there because the Grid/Collection stitching
>         plugin uses it.
>
>     I took the source on github
>     https://github.com/fiji/Stitching/blob/master/src/main/java/tools/RoiPicker.java
>     <https://github.com/fiji/Stitching/blob/master/src/main/java/tools/RoiPicker.java>
>     put it in the macros/tools directory, and compiled it.
>     Sure enough, I have the tool. (Interesting --no class file is
>     created in that directory. Why?)
>
>     The problem is that I have to compile it  every time I start Fiji.
>
>     So what is  the  correct  way to do this?
>
>     --aryeh
>
>
>         I am interested in using it without first  stitching
>         something,an dit must be there, but my Find command utility
>         doe snot find it, and I do not see it in the list of tools.
>
>         I must be missing something obvious. Can someone tell me where
>         to find it and how to put it into the toolbar?
>
>         Thanks in advance.
>
>         --aryeh
>
>         --
>


--
Aryeh Weiss
Faculty of Engineering
Bar Ilan University
Ramat Gan 52900 Israel

Ph:  972-3-5317638
FAX: 972-3-7384051


--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html
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