tissue cell geometry stats plug-in

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tissue cell geometry stats plug-in

Houssin, Nathalie Samantha Laetitia
Hello,

I am looking for a plug-in able to do some morphometric analysis.
I would like to measure the dimensions of my cells (width and length) in a tissue. I have started manually (see image enclosed) but it is very repetitive and thought I could use some Image J plug-in to help me.

Let me know if such a tool exits,

Thank you for your help and time,

[cid:image003.jpg@01D428CE.993490C0]

Nathalie


Nathalie HOUSSIN

Plageman's Lab
Fry Hall room 350
338 W 10th avenue
Columbus, Ohio 43210
Tel: 614-292-0636


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Re: tissue cell geometry stats plug-in

Andrew-2
You should be able to do this with the standard ImageJ measurement tools
after some initial image processing:
https://imagej.nih.gov/ij/docs/guide/146-30.html#toc-Subsection-30.7



On Tue, Jul 31, 2018 at 1:03 PM Houssin, Nathalie Samantha Laetitia <
[hidden email]> wrote:

> Hello,
>
> I am looking for a plug-in able to do some morphometric analysis.
> I would like to measure the dimensions of my cells (width and length) in a
> tissue. I have started manually (see image enclosed) but it is very
> repetitive and thought I could use some Image J plug-in to help me.
>
> Let me know if such a tool exits,
>
> Thank you for your help and time,
>
> [cid:image003.jpg@01D428CE.993490C0]
>
> Nathalie
>
>
> Nathalie HOUSSIN
>
> Plageman's Lab
> Fry Hall room 350
> 338 W 10th avenue
> Columbus, Ohio 43210
> Tel: 614-292-0636
>
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html
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Re: tissue cell geometry stats plug-in

Houssin, Nathalie Samantha Laetitia
Thank you for the link Andrew,

It seems that there are indeed few helpful tools to address my question. I will see how to segment my images for using the fit ellipse plugin

Best,

Nathalie


-----Original Message-----
From: ImageJ Interest Group [mailto:[hidden email]] On Behalf Of Andrew
Sent: Tuesday, July 31, 2018 1:58 PM
To: [hidden email]
Subject: Re: tissue cell geometry stats plug-in

You should be able to do this with the standard ImageJ measurement tools after some initial image processing:
https://imagej.nih.gov/ij/docs/guide/146-30.html#toc-Subsection-30.7



On Tue, Jul 31, 2018 at 1:03 PM Houssin, Nathalie Samantha Laetitia < [hidden email]> wrote:

> Hello,
>
> I am looking for a plug-in able to do some morphometric analysis.
> I would like to measure the dimensions of my cells (width and length)
> in a tissue. I have started manually (see image enclosed) but it is
> very repetitive and thought I could use some Image J plug-in to help me.
>
> Let me know if such a tool exits,
>
> Thank you for your help and time,
>
> [cid:image003.jpg@01D428CE.993490C0]
>
> Nathalie
>
>
> Nathalie HOUSSIN
>
> Plageman's Lab
> Fry Hall room 350
> 338 W 10th avenue
> Columbus, Ohio 43210
> Tel: 614-292-0636
>
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html

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