stitching tile configuration to bigdataviewer xml?

classic Classic list List threaded Threaded
3 messages Options
Reply | Threaded
Open this post in threaded view
|

stitching tile configuration to bigdataviewer xml?

Ignacio Arganda-Carreras
Hello everybody,

Is there an automatic way (script) to convert the tile configuration file
produced in the Stitching plugin to the XML configuration file needed in
the BigDataViewer?

Thanks in advance!

ignacio

--
Ignacio Arganda-Carreras, Ph.D.
Seung's lab, 46-5065
Department of Brain and Cognitive Sciences
Massachusetts Institute of Technology
43 Vassar St.
Cambridge, MA 02139
USA

Phone: (001) 617-324-3747
Website: http://bioweb.cnb.csic.es/~iarganda/index_EN.html

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html
Reply | Threaded
Open this post in threaded view
|

Re: stitching tile configuration to bigdataviewer xml?

Stephan Preibisch
Hi Ignacio,

not yet, but I put this on my list … makes a lot of sense!

Cheers,
Stephan

---

Dr. Stephan Preibisch
HFSP Fellow
Robert H. Singer / Eugene Myers lab

Albert Einstein College of Medicine / HHMI Janelia Farm / MPI-CBG

email: [hidden email] <mailto:[hidden email]> / [hidden email] <mailto:[hidden email]> / [hidden email] <mailto:[hidden email]>
web: http://www.preibisch.net/ <http://fly.mpi-cbg.de/preibisch>

> On Mar 25, 2015, at 10:46 , Ignacio Arganda-Carreras <[hidden email]> wrote:
>
> Hello everybody,
>
> Is there an automatic way (script) to convert the tile configuration file
> produced in the Stitching plugin to the XML configuration file needed in
> the BigDataViewer?
>
> Thanks in advance!
>
> ignacio
>
> --
> Ignacio Arganda-Carreras, Ph.D.
> Seung's lab, 46-5065
> Department of Brain and Cognitive Sciences
> Massachusetts Institute of Technology
> 43 Vassar St.
> Cambridge, MA 02139
> USA
>
> Phone: (001) 617-324-3747
> Website: http://bioweb.cnb.csic.es/~iarganda/index_EN.html
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html


--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html
Reply | Threaded
Open this post in threaded view
|

Re: stitching tile configuration to bigdataviewer xml?

Ignacio Arganda-Carreras-2
Awesome, thank you very much!

On Wed, Mar 25, 2015 at 6:13 PM, Stephan Preibisch <[hidden email]>
wrote:

> Hi Ignacio,
>
> not yet, but I put this on my list … makes a lot of sense!
>
> Cheers,
> Stephan
>
> ---
>
> Dr. Stephan Preibisch
> HFSP Fellow
> Robert H. Singer / Eugene Myers lab
>
> Albert Einstein College of Medicine / HHMI Janelia Farm / MPI-CBG
>
> email: [hidden email] <mailto:
> [hidden email]> / [hidden email] <mailto:
> [hidden email]> / [hidden email] <mailto:
> [hidden email]>
> web: http://www.preibisch.net/ <http://fly.mpi-cbg.de/preibisch>
> > On Mar 25, 2015, at 10:46 , Ignacio Arganda-Carreras <
> [hidden email]> wrote:
> >
> > Hello everybody,
> >
> > Is there an automatic way (script) to convert the tile configuration file
> > produced in the Stitching plugin to the XML configuration file needed in
> > the BigDataViewer?
> >
> > Thanks in advance!
> >
> > ignacio
> >
> > --
> > Ignacio Arganda-Carreras, Ph.D.
> > Seung's lab, 46-5065
> > Department of Brain and Cognitive Sciences
> > Massachusetts Institute of Technology
> > 43 Vassar St.
> > Cambridge, MA 02139
> > USA
> >
> > Phone: (001) 617-324-3747
> > Website: http://bioweb.cnb.csic.es/~iarganda/index_EN.html
> >
> > --
> > ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>



--
Ignacio Arganda-Carreras, Ph.D.
Institut Jean-Pierre Bourgin, UMR1318 INRA-AgroParisTech
Bâtiment 2
INRA Centre de Versailles-Grignon
Route de St-Cyr (RD10)
78026 Versailles Cedex France

Tel : +33 (0)1 30 83 30 00 - fax : +33 (0)1 30 83 33 19
Website: http://sites.google.com/site/iargandacarreras/
<http://biocomp.cnb.csic.es/~iarganda/index_EN.html>

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html