stiching video files side by side

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stiching video files side by side

Dipanjana Ghosh
Hi all,
Hope all are doing good in COVID-19 situation.

I wanted some help about stitching or exporting separate video files (2- 3)
together to represent as a single file as shown in journals.
Any idea how to do that from image J?
Kindly let me know
Thanking you
Dipanjana

--
Dr. Dipanjana Ghosh

Prev: Post doctoral Research Fellow
Department of Biological Sciences
National University of Singapore
Singapore

--
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Re: stiching video files side by side

Krs5
Dear Dipanjana

You can use Image > Stacks > Tools > Combine for this.

Best wishes

Kees

________________________________

Hi all,
Hope all are doing good in COVID-19 situation.

I wanted some help about stitching or exporting separate video files (2- 3)
together to represent as a single file as shown in journals.
Any idea how to do that from image J?
Kindly let me know
Thanking you
Dipanjana

--
Dr. Dipanjana Ghosh

Prev: Post doctoral Research Fellow
Department of Biological Sciences
National University of Singapore
Singapore

--
ImageJ mailing list: https://eur03.safelinks.protection.outlook.com/?url=http%3A%2F%2Fimagej.nih.gov%2Fij%2Flist.html&data=02%7C01%7Ckrs5%40leicester.ac.uk%7C8377125411d34c1d101908d806dca2cb%7Caebecd6a31d44b0195ce8274afe853d9%7C0%7C1%7C637266891993899917&sdata=DvXY458MQ%2FJDohKIqFGqmc0vE45ANHCWPN9A8%2FZ%2F8nk%3D&reserved=0

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Re: stiching video files side by side

Dipanjana Ghosh
Great...It works...thanks a lot

On Tue, Jun 2, 2020 at 4:11 PM Straatman, Kees (Dr.) <[hidden email]>
wrote:

> Dear Dipanjana
>
> You can use Image > Stacks > Tools > Combine for this.
>
> Best wishes
>
> Kees
>
> ________________________________
>
> Hi all,
> Hope all are doing good in COVID-19 situation.
>
> I wanted some help about stitching or exporting separate video files (2- 3)
> together to represent as a single file as shown in journals.
> Any idea how to do that from image J?
> Kindly let me know
> Thanking you
> Dipanjana
>
> --
> Dr. Dipanjana Ghosh
>
> Prev: Post doctoral Research Fellow
> Department of Biological Sciences
> National University of Singapore
> Singapore
>
> --
> ImageJ mailing list:
> https://eur03.safelinks.protection.outlook.com/?url=http%3A%2F%2Fimagej.nih.gov%2Fij%2Flist.html&amp;data=02%7C01%7Ckrs5%40leicester.ac.uk%7C8377125411d34c1d101908d806dca2cb%7Caebecd6a31d44b0195ce8274afe853d9%7C0%7C1%7C637266891993899917&amp;sdata=DvXY458MQ%2FJDohKIqFGqmc0vE45ANHCWPN9A8%2FZ%2F8nk%3D&amp;reserved=0
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>


--
Dr. Dipanjana Ghosh

Prev: Post doctoral Research Fellow
Department of Biological Sciences
National University of Singapore
Singapore

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html
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Re: stiching video files side by side

Dipanjana Ghosh
Hi all,
In continuation to my previous query, how to add scale bars at 3 different
location of the stitched stacks? If I am inserting scale bars before
stitching, they are going away after stitching. So after combining 3 stacks
I want to add scale bars at right corner of each individual set of stacks.
Is that possible?
Kindly let me know
Thanks & Regards,
Dipanjana


On Tue, Jun 2, 2020 at 4:20 PM Dipanjana Ghosh <[hidden email]>
wrote:

> Great...It works...thanks a lot
>
> On Tue, Jun 2, 2020 at 4:11 PM Straatman, Kees (Dr.) <[hidden email]>
> wrote:
>
>> Dear Dipanjana
>>
>> You can use Image > Stacks > Tools > Combine for this.
>>
>> Best wishes
>>
>> Kees
>>
>> ________________________________
>>
>> Hi all,
>> Hope all are doing good in COVID-19 situation.
>>
>> I wanted some help about stitching or exporting separate video files (2-
>> 3)
>> together to represent as a single file as shown in journals.
>> Any idea how to do that from image J?
>> Kindly let me know
>> Thanking you
>> Dipanjana
>>
>> --
>> Dr. Dipanjana Ghosh
>>
>> Prev: Post doctoral Research Fellow
>> Department of Biological Sciences
>> National University of Singapore
>> Singapore
>>
>> --
>> ImageJ mailing list:
>> https://eur03.safelinks.protection.outlook.com/?url=http%3A%2F%2Fimagej.nih.gov%2Fij%2Flist.html&amp;data=02%7C01%7Ckrs5%40leicester.ac.uk%7C8377125411d34c1d101908d806dca2cb%7Caebecd6a31d44b0195ce8274afe853d9%7C0%7C1%7C637266891993899917&amp;sdata=DvXY458MQ%2FJDohKIqFGqmc0vE45ANHCWPN9A8%2FZ%2F8nk%3D&amp;reserved=0
>>
>> --
>> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>>
>
>
> --
> Dr. Dipanjana Ghosh
>
> Prev: Post doctoral Research Fellow
> Department of Biological Sciences
> National University of Singapore
> Singapore
>
>

--
Dr. Dipanjana Ghosh

Prev: Post doctoral Research Fellow
Department of Biological Sciences
National University of Singapore
Singapore

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html
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Re: stiching video files side by side

Krs5
Dear Dipanjana,

Probably,

Make a selection/ROI where you want to add a scale bar. Using Analyze > Tools > Scale Bar.... you have the option under Location to select "At Selection" and a scale bar will be placed where the ROI is.

If "Overlay" is selected the scale bar will be in the overlay on the image; if deselected it will be burned in the image and cannot be removed but will show up when the image is opened in other software.

Best wishes

Kees

________________________________


Hi all,
In continuation to my previous query, how to add scale bars at 3 different
location of the stitched stacks? If I am inserting scale bars before
stitching, they are going away after stitching. So after combining 3 stacks
I want to add scale bars at right corner of each individual set of stacks.
Is that possible?
Kindly let me know
Thanks & Regards,
Dipanjana


On Tue, Jun 2, 2020 at 4:20 PM Dipanjana Ghosh <[hidden email]>
wrote:

> Great...It works...thanks a lot
>
> On Tue, Jun 2, 2020 at 4:11 PM Straatman, Kees (Dr.) <[hidden email]>
> wrote:
>
>> Dear Dipanjana
>>
>> You can use Image > Stacks > Tools > Combine for this.
>>
>> Best wishes
>>
>> Kees
>>
>> ________________________________
>>
>> Hi all,
>> Hope all are doing good in COVID-19 situation.
>>
>> I wanted some help about stitching or exporting separate video files (2-
>> 3)
>> together to represent as a single file as shown in journals.
>> Any idea how to do that from image J?
>> Kindly let me know
>> Thanking you
>> Dipanjana
>>
>> --
>> Dr. Dipanjana Ghosh
>>
>> Prev: Post doctoral Research Fellow
>> Department of Biological Sciences
>> National University of Singapore
>> Singapore
>>
>> --
>> ImageJ mailing list:
>> https://eur03.safelinks.protection.outlook.com/?url=http%3A%2F%2Fimagej.nih.gov%2Fij%2Flist.html&amp;data=02%7C01%7Ckrs5%40leicester.ac.uk%7C3d406c7cdcf944ec82c608d808a32fbb%7Caebecd6a31d44b0195ce8274afe853d9%7C0%7C0%7C637268844263656846&amp;sdata=%2F2EYGvmay8Bkss2WvZE4y2z4HOyhtHoti7yX808bJZ4%3D&amp;reserved=0
>>
>> --
>> ImageJ mailing list: https://eur03.safelinks.protection.outlook.com/?url=http%3A%2F%2Fimagej.nih.gov%2Fij%2Flist.html&amp;data=02%7C01%7Ckrs5%40leicester.ac.uk%7C3d406c7cdcf944ec82c608d808a32fbb%7Caebecd6a31d44b0195ce8274afe853d9%7C0%7C0%7C637268844263656846&amp;sdata=%2F2EYGvmay8Bkss2WvZE4y2z4HOyhtHoti7yX808bJZ4%3D&amp;reserved=0
>>
>
>
> --
> Dr. Dipanjana Ghosh
>
> Prev: Post doctoral Research Fellow
> Department of Biological Sciences
> National University of Singapore
> Singapore
>
>

--
Dr. Dipanjana Ghosh

Prev: Post doctoral Research Fellow
Department of Biological Sciences
National University of Singapore
Singapore

--
ImageJ mailing list: https://eur03.safelinks.protection.outlook.com/?url=http%3A%2F%2Fimagej.nih.gov%2Fij%2Flist.html&amp;data=02%7C01%7Ckrs5%40leicester.ac.uk%7C3d406c7cdcf944ec82c608d808a32fbb%7Caebecd6a31d44b0195ce8274afe853d9%7C0%7C0%7C637268844263656846&amp;sdata=%2F2EYGvmay8Bkss2WvZE4y2z4HOyhtHoti7yX808bJZ4%3D&amp;reserved=0

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Re: stiching video files side by side

Dipanjana Ghosh
Unchecking the scalebar worked...otherwise it was disappearing ...thanks a
lot..
Any idea about adding labels? When I am using Image > stacks>labels and
putting them as per x and y location, they look fine in the combined
stacks..However, when I am exporting them as avi, the labels are shifted
from exact location. How to solve this?
Thanks
Dipanjana

On Thu, 4 Jun 2020, 22:38 Straatman, Kees (Dr.), <[hidden email]>
wrote:

> Dear Dipanjana,
>
> Probably,
>
> Make a selection/ROI where you want to add a scale bar. Using Analyze >
> Tools > Scale Bar.... you have the option under Location to select "At
> Selection" and a scale bar will be placed where the ROI is.
>
> If "Overlay" is selected the scale bar will be in the overlay on the
> image; if deselected it will be burned in the image and cannot be removed
> but will show up when the image is opened in other software.
>
> Best wishes
>
> Kees
>
> ________________________________
>
>
> Hi all,
> In continuation to my previous query, how to add scale bars at 3 different
> location of the stitched stacks? If I am inserting scale bars before
> stitching, they are going away after stitching. So after combining 3 stacks
> I want to add scale bars at right corner of each individual set of stacks.
> Is that possible?
> Kindly let me know
> Thanks & Regards,
> Dipanjana
>
>
> On Tue, Jun 2, 2020 at 4:20 PM Dipanjana Ghosh <[hidden email]>
> wrote:
>
> > Great...It works...thanks a lot
> >
> > On Tue, Jun 2, 2020 at 4:11 PM Straatman, Kees (Dr.) <
> [hidden email]>
> > wrote:
> >
> >> Dear Dipanjana
> >>
> >> You can use Image > Stacks > Tools > Combine for this.
> >>
> >> Best wishes
> >>
> >> Kees
> >>
> >> ________________________________
> >>
> >> Hi all,
> >> Hope all are doing good in COVID-19 situation.
> >>
> >> I wanted some help about stitching or exporting separate video files (2-
> >> 3)
> >> together to represent as a single file as shown in journals.
> >> Any idea how to do that from image J?
> >> Kindly let me know
> >> Thanking you
> >> Dipanjana
> >>
> >> --
> >> Dr. Dipanjana Ghosh
> >>
> >> Prev: Post doctoral Research Fellow
> >> Department of Biological Sciences
> >> National University of Singapore
> >> Singapore
> >>
> >> --
> >> ImageJ mailing list:
> >>
> https://eur03.safelinks.protection.outlook.com/?url=http%3A%2F%2Fimagej.nih.gov%2Fij%2Flist.html&amp;data=02%7C01%7Ckrs5%40leicester.ac.uk%7C3d406c7cdcf944ec82c608d808a32fbb%7Caebecd6a31d44b0195ce8274afe853d9%7C0%7C0%7C637268844263656846&amp;sdata=%2F2EYGvmay8Bkss2WvZE4y2z4HOyhtHoti7yX808bJZ4%3D&amp;reserved=0
> >>
> >> --
> >> ImageJ mailing list:
> https://eur03.safelinks.protection.outlook.com/?url=http%3A%2F%2Fimagej.nih.gov%2Fij%2Flist.html&amp;data=02%7C01%7Ckrs5%40leicester.ac.uk%7C3d406c7cdcf944ec82c608d808a32fbb%7Caebecd6a31d44b0195ce8274afe853d9%7C0%7C0%7C637268844263656846&amp;sdata=%2F2EYGvmay8Bkss2WvZE4y2z4HOyhtHoti7yX808bJZ4%3D&amp;reserved=0
> >>
> >
> >
> > --
> > Dr. Dipanjana Ghosh
> >
> > Prev: Post doctoral Research Fellow
> > Department of Biological Sciences
> > National University of Singapore
> > Singapore
> >
> >
>
> --
> Dr. Dipanjana Ghosh
>
> Prev: Post doctoral Research Fellow
> Department of Biological Sciences
> National University of Singapore
> Singapore
>
> --
> ImageJ mailing list:
> https://eur03.safelinks.protection.outlook.com/?url=http%3A%2F%2Fimagej.nih.gov%2Fij%2Flist.html&amp;data=02%7C01%7Ckrs5%40leicester.ac.uk%7C3d406c7cdcf944ec82c608d808a32fbb%7Caebecd6a31d44b0195ce8274afe853d9%7C0%7C0%7C637268844263656846&amp;sdata=%2F2EYGvmay8Bkss2WvZE4y2z4HOyhtHoti7yX808bJZ4%3D&amp;reserved=0
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

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Re: stiching video files side by side

Krs5
 Dear Dipanjana,

Sorry, I am not able to reproduce this problem. If I run the macro code below the labels are at the same location in both stacks

dir = getDir("Select a folder to save the results");
run("MRI Stack");
run("Duplicate...", "duplicate");
run("Combine...", "stack1=mri-stack.tif stack2=mri-stack-1.tif");
run("Label...", "format=0 starting=0 interval=2 x=5 y=20 font=15 text=[] range=1-27");
run("AVI... ", "compression=JPEG frame=5 save=["+dir+"Combined Stacks.avi]");
open(dir+"Combined Stacks.avi");
selectWindow("Combined Stacks.avi");
makeRectangle(12, 3, 10, 15);
roiManager("Add");
selectWindow("Combined Stacks");
roiManager("Select", 0);

Best wishes

Kees

________________________________
Sent: 04 June 2020 19:01
Subject: Re: stiching video files side by side

Unchecking the scalebar worked...otherwise it was disappearing ...thanks a
lot..
Any idea about adding labels? When I am using Image > stacks>labels and
putting them as per x and y location, they look fine in the combined
stacks..However, when I am exporting them as avi, the labels are shifted
from exact location. How to solve this?
Thanks
Dipanjana

On Thu, 4 Jun 2020, 22:38 Straatman, Kees (Dr.), <[hidden email]>
wrote:

> Dear Dipanjana,
>
> Probably,
>
> Make a selection/ROI where you want to add a scale bar. Using Analyze >
> Tools > Scale Bar.... you have the option under Location to select "At
> Selection" and a scale bar will be placed where the ROI is.
>
> If "Overlay" is selected the scale bar will be in the overlay on the
> image; if deselected it will be burned in the image and cannot be removed
> but will show up when the image is opened in other software.
>
> Best wishes
>
> Kees
>
> ________________________________
>
>
> Hi all,
> In continuation to my previous query, how to add scale bars at 3 different
> location of the stitched stacks? If I am inserting scale bars before
> stitching, they are going away after stitching. So after combining 3 stacks
> I want to add scale bars at right corner of each individual set of stacks.
> Is that possible?
> Kindly let me know
> Thanks & Regards,
> Dipanjana
>
>
> On Tue, Jun 2, 2020 at 4:20 PM Dipanjana Ghosh <[hidden email]>
> wrote:
>
> > Great...It works...thanks a lot
> >
> > On Tue, Jun 2, 2020 at 4:11 PM Straatman, Kees (Dr.) <
> [hidden email]>
> > wrote:
> >
> >> Dear Dipanjana
> >>
> >> You can use Image > Stacks > Tools > Combine for this.
> >>
> >> Best wishes
> >>
> >> Kees
> >>
> >> ________________________________
> >>
> >> Hi all,
> >> Hope all are doing good in COVID-19 situation.
> >>
> >> I wanted some help about stitching or exporting separate video files (2-
> >> 3)
> >> together to represent as a single file as shown in journals.
> >> Any idea how to do that from image J?
> >> Kindly let me know
> >> Thanking you
> >> Dipanjana
> >>
> >> --
> >> Dr. Dipanjana Ghosh
> >>
> >> Prev: Post doctoral Research Fellow
> >> Department of Biological Sciences
> >> National University of Singapore
> >> Singapore
> >>
> >> --
> >> ImageJ mailing list:
> >>
> https://eur03.safelinks.protection.outlook.com/?url=http%3A%2F%2Fimagej.nih.gov%2Fij%2Flist.html&amp;data=02%7C01%7Ckrs5%40leicester.ac.uk%7Cd5de86bfd26a4d589a4008d808b1a783%7Caebecd6a31d44b0195ce8274afe853d9%7C0%7C0%7C637268906398228095&amp;sdata=J6ezB9%2BMCLpN3a28RmvmdfUULUopmCJK%2F8QudWcMcoA%3D&amp;reserved=0
> >>
> >> --
> >> ImageJ mailing list:
> https://eur03.safelinks.protection.outlook.com/?url=http%3A%2F%2Fimagej.nih.gov%2Fij%2Flist.html&amp;data=02%7C01%7Ckrs5%40leicester.ac.uk%7Cd5de86bfd26a4d589a4008d808b1a783%7Caebecd6a31d44b0195ce8274afe853d9%7C0%7C0%7C637268906398238079&amp;sdata=zz%2BOA%2FvKewTOicG1y3WlVLorgj9D7xzmkVeFTM4l1VE%3D&amp;reserved=0
> >>
> >
> >
> > --
> > Dr. Dipanjana Ghosh
> >
> > Prev: Post doctoral Research Fellow
> > Department of Biological Sciences
> > National University of Singapore
> > Singapore
> >
> >
>
> --
> Dr. Dipanjana Ghosh
>
> Prev: Post doctoral Research Fellow
> Department of Biological Sciences
> National University of Singapore
> Singapore
>
> --
> ImageJ mailing list:
> https://eur03.safelinks.protection.outlook.com/?url=http%3A%2F%2Fimagej.nih.gov%2Fij%2Flist.html&amp;data=02%7C01%7Ckrs5%40leicester.ac.uk%7Cd5de86bfd26a4d589a4008d808b1a783%7Caebecd6a31d44b0195ce8274afe853d9%7C0%7C0%7C637268906398238079&amp;sdata=zz%2BOA%2FvKewTOicG1y3WlVLorgj9D7xzmkVeFTM4l1VE%3D&amp;reserved=0
>
> --
> ImageJ mailing list: https://eur03.safelinks.protection.outlook.com/?url=http%3A%2F%2Fimagej.nih.gov%2Fij%2Flist.html&amp;data=02%7C01%7Ckrs5%40leicester.ac.uk%7Cd5de86bfd26a4d589a4008d808b1a783%7Caebecd6a31d44b0195ce8274afe853d9%7C0%7C0%7C637268906398238079&amp;sdata=zz%2BOA%2FvKewTOicG1y3WlVLorgj9D7xzmkVeFTM4l1VE%3D&amp;reserved=0
>

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Re: stiching video files side by side

Dipanjana Ghosh
Solved
Added the image>stack> labels before combine
Thanks

On Fri, 5 Jun 2020, 14:05 Straatman, Kees (Dr.), <[hidden email]>
wrote:

>  Dear Dipanjana,
>
> Sorry, I am not able to reproduce this problem. If I run the macro code
> below the labels are at the same location in both stacks
>
> dir = getDir("Select a folder to save the results");
> run("MRI Stack");
> run("Duplicate...", "duplicate");
> run("Combine...", "stack1=mri-stack.tif stack2=mri-stack-1.tif");
> run("Label...", "format=0 starting=0 interval=2 x=5 y=20 font=15 text=[]
> range=1-27");
> run("AVI... ", "compression=JPEG frame=5 save=["+dir+"Combined
> Stacks.avi]");
> open(dir+"Combined Stacks.avi");
> selectWindow("Combined Stacks.avi");
> makeRectangle(12, 3, 10, 15);
> roiManager("Add");
> selectWindow("Combined Stacks");
> roiManager("Select", 0);
>
> Best wishes
>
> Kees
>
> ________________________________
> Sent: 04 June 2020 19:01
> Subject: Re: stiching video files side by side
>
> Unchecking the scalebar worked...otherwise it was disappearing ...thanks a
> lot..
> Any idea about adding labels? When I am using Image > stacks>labels and
> putting them as per x and y location, they look fine in the combined
> stacks..However, when I am exporting them as avi, the labels are shifted
> from exact location. How to solve this?
> Thanks
> Dipanjana
>
> On Thu, 4 Jun 2020, 22:38 Straatman, Kees (Dr.), <[hidden email]>
> wrote:
>
> > Dear Dipanjana,
> >
> > Probably,
> >
> > Make a selection/ROI where you want to add a scale bar. Using Analyze >
> > Tools > Scale Bar.... you have the option under Location to select "At
> > Selection" and a scale bar will be placed where the ROI is.
> >
> > If "Overlay" is selected the scale bar will be in the overlay on the
> > image; if deselected it will be burned in the image and cannot be removed
> > but will show up when the image is opened in other software.
> >
> > Best wishes
> >
> > Kees
> >
> > ________________________________
> >
> >
> > Hi all,
> > In continuation to my previous query, how to add scale bars at 3
> different
> > location of the stitched stacks? If I am inserting scale bars before
> > stitching, they are going away after stitching. So after combining 3
> stacks
> > I want to add scale bars at right corner of each individual set of
> stacks.
> > Is that possible?
> > Kindly let me know
> > Thanks & Regards,
> > Dipanjana
> >
> >
> > On Tue, Jun 2, 2020 at 4:20 PM Dipanjana Ghosh <[hidden email]>
> > wrote:
> >
> > > Great...It works...thanks a lot
> > >
> > > On Tue, Jun 2, 2020 at 4:11 PM Straatman, Kees (Dr.) <
> > [hidden email]>
> > > wrote:
> > >
> > >> Dear Dipanjana
> > >>
> > >> You can use Image > Stacks > Tools > Combine for this.
> > >>
> > >> Best wishes
> > >>
> > >> Kees
> > >>
> > >> ________________________________
> > >>
> > >> Hi all,
> > >> Hope all are doing good in COVID-19 situation.
> > >>
> > >> I wanted some help about stitching or exporting separate video files
> (2-
> > >> 3)
> > >> together to represent as a single file as shown in journals.
> > >> Any idea how to do that from image J?
> > >> Kindly let me know
> > >> Thanking you
> > >> Dipanjana
> > >>
> > >> --
> > >> Dr. Dipanjana Ghosh
> > >>
> > >> Prev: Post doctoral Research Fellow
> > >> Department of Biological Sciences
> > >> National University of Singapore
> > >> Singapore
> > >>
> > >> --
> > >> ImageJ mailing list:
> > >>
> >
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> > > Dr. Dipanjana Ghosh
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> > > Prev: Post doctoral Research Fellow
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> > Dr. Dipanjana Ghosh
> >
> > Prev: Post doctoral Research Fellow
> > Department of Biological Sciences
> > National University of Singapore
> > Singapore
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