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aki
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save as image sequence

aki
Hello,

I am a new ImageJ/Fiji user.

I am trying to use Fiji on linux (Devian Debian 3.2.81-2 x86_64) with using a simple Macro to save image sequences.
I used Windows version of Fiji to record the steps of Macro. and the command line works well in Windows version.
However, when I used the Fiji macro running on linux, it stopped saving up to 2330 files although the avi file contained 26997 flames.
 
Here is the Macro (named RunBatch.ijm) I am using:
open("INS.avi")
run("Image Sequence... ", "format=TIFF digits=8 save=[./tmp/INS00000000.tif]");

The command line I used to run this Macro is following:
./ImageJ-linux64 --headless --console -macro RunBatch.ijm --memory 8200M

I would be grateful if you can give a tip to avoid this issue.

Thank you very much in advance
Sincerely




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Re: save as image sequence

ctrueden
Hi,

> when I used the Fiji macro running on linux, it stopped saving up to
> 2330 files although the avi file contained 26997 flames.

Does ImageJ freeze or hang? If so, maybe this helps:
http://imagej.net/Troubleshooting#If_ImageJ_freezes_or_hangs

Or does the process simply stop and purport to be finished?

Does it work when you run from the UI, i.e. not headless?

Regards,
Curtis

--
Curtis Rueden
LOCI software architect - https://loci.wisc.edu/software
ImageJ2 lead, Fiji maintainer - https://imagej.net/User:Rueden
Did you know ImageJ has a forum? http://forum.imagej.net/


On Wed, Apr 5, 2017 at 7:00 AM, aki <[hidden email]> wrote:

> Hello,
>
> I am a new ImageJ/Fiji user.
>
> I am trying to use Fiji on linux (Devian Debian 3.2.81-2 x86_64) with using
> a simple Macro to save image sequences.
> I used Windows version of Fiji to record the steps of Macro. and the
> command
> line works well in Windows version.
> However, when I used the Fiji macro running on linux, it stopped saving up
> to 2330 files although the avi file contained 26997 flames.
>
> Here is the Macro (named RunBatch.ijm) I am using:
> open("INS.avi")
> run("Image Sequence... ", "format=TIFF digits=8
> save=[./tmp/INS00000000.tif]");
>
> The command line I used to run this Macro is following:
> ./ImageJ-linux64 --headless --console -macro RunBatch.ijm --memory 8200M
>
> I would be grateful if you can give a tip to avoid this issue.
>
> Thank you very much in advance
> Sincerely
>
>
>
>
>
>
>
>
> --
> View this message in context: http://imagej.1557.x6.nabble.c
> om/save-as-image-sequence-tp5018442.html
> Sent from the ImageJ mailing list archive at Nabble.com.
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html
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