restack a hyperstack

classic Classic list List threaded Threaded
3 messages Options
Reply | Threaded
Open this post in threaded view
|

restack a hyperstack

Thomas Suchyna
Hi,
I have a hyperstack with six z-positions at each time point (27 time points). I unstacked the hyperstack into six separate stacks containing the 27 z slices at each time point. I then performed some image processing on each slice-stack separately, and now I want to recombine them into the original hyperstack. Is there a way to do this?

I tried interleaving two slice-stacks followed by a stack-to-hyperstack conversion. But I can't recombine all six slice-stacks in the proper order.

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html
Reply | Threaded
Open this post in threaded view
|

Re: restack a hyperstack

Fred Damen
Image->Stacks->Tools->Concatenate...

java:
imp = (new Concatenator()).concatenate(new ImagePlus[]{imp1,imp2},true);

Fred

On Fri, November 2, 2018 4:16 pm, Thomas Suchyna wrote:

> Hi,
> I have a hyperstack with six z-positions at each time point (27 time points).
> I unstacked the hyperstack into six separate stacks containing the 27 z slices
> at each time point. I then performed some image processing on each slice-stack
> separately, and now I want to recombine them into the original hyperstack. Is
> there a way to do this?
>
> I tried interleaving two slice-stacks followed by a stack-to-hyperstack
> conversion. But I can't recombine all six slice-stacks in the proper order.
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html
Reply | Threaded
Open this post in threaded view
|

Re: restack a hyperstack

Thomas Suchyna
In reply to this post by Thomas Suchyna
Thank you

Tom

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html