problem opening sample images.

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problem opening sample images.

Aryeh Weiss
When I open sample images using File>Open Samples...
the bioformats import menu pops up

when I select ok, the following pops up:

and then then image opens

The following js does something similar, but only the Opener pop-up is seen.
imp = IJ.openImage("http://imagej.nih.gov/ij/images/boats.gif");
imp.show();

I went back to version 1.47, but it still happens there (it has been
happening for a while, but I finally am getting around to asking).
I am running Fiji, so I tried to deselect the bio-formats update site.
but a strange this happened -- no files  were listed to remove, and the
updater offered no changes regardless of whether that site was selected
or not.

tnx in advance for any ideas about this.
--aryeh

--
Aryeh Weiss
Faculty of Engineering
Bar Ilan University
Ramat Gan 52900 Israel

Ph:  972-3-5317638
FAX: 972-3-7384051


--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html

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Re: problem opening sample images.

Curtis Rueden-2
Hi Aryeh,

It seems like a bug in the "Cache Sample Images" command under File > Open
Samples. I could reproduce the behavior you describe by first running Cache
Sample Images, and then trying to open a sample image. The issue can be
avoided by deleting your Fiji.app/samples directory—then the sample images
will load from their remote URLs again.

As for the Bio-Formats update site: it is for Bio-Formats daily builds. The
base Fiji distribution ships with Bio-Formats (latest release version)
installed. So unticking that site won't necessarily remove any files. It
may downgrade versions of Bio-Formats JAR files from snapshot to release
versions, depending on whether there is any new build since the last
release.

Regards,
Curtis

On Wed, Jul 3, 2019 at 8:33 AM Aryeh Weiss <[hidden email]> wrote:

> When I open sample images using File>Open Samples...
> the bioformats import menu pops up
>
> when I select ok, the following pops up:
>
> and then then image opens
>
> The following js does something similar, but only the Opener pop-up is
> seen.
> imp = IJ.openImage("http://imagej.nih.gov/ij/images/boats.gif");
> imp.show();
>
> I went back to version 1.47, but it still happens there (it has been
> happening for a while, but I finally am getting around to asking).
> I am running Fiji, so I tried to deselect the bio-formats update site.
> but a strange this happened -- no files  were listed to remove, and the
> updater offered no changes regardless of whether that site was selected
> or not.
>
> tnx in advance for any ideas about this.
> --aryeh
>
> --
> Aryeh Weiss
> Faculty of Engineering
> Bar Ilan University
> Ramat Gan 52900 Israel
>
> Ph:  972-3-5317638
> FAX: 972-3-7384051
>
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html
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Re: problem opening sample images.

Aryeh Weiss
Hi Curtis

Thank you for your quick and accurate reply.
Removing the samples directory avoids the problem.

Best regards
--aryeh


On 03/07/2019 22:27, Curtis Rueden wrote:

> Hi Aryeh,
>
> It seems like a bug in the "Cache Sample Images" command under File >
> Open Samples. I could reproduce the behavior you describe by first
> running Cache Sample Images, and then trying to open a sample image.
> The issue can be avoided by deleting your Fiji.app/samples
> directory—then the sample images will load from their remote URLs again.
>
> As for the Bio-Formats update site: it is for Bio-Formats daily
> builds. The base Fiji distribution ships with Bio-Formats (latest
> release version) installed. So unticking that site won't necessarily
> remove any files. It may downgrade versions of Bio-Formats JAR files
> from snapshot to release versions, depending on whether there is any
> new build since the last release.
>
> Regards,
> Curtis
>
> On Wed, Jul 3, 2019 at 8:33 AM Aryeh Weiss <[hidden email]
> <mailto:[hidden email]>> wrote:
>
>     When I open sample images using File>Open Samples...
>     the bioformats import menu pops up
>
>     when I select ok, the following pops up:
>
>     and then then image opens
>
>     The following js does something similar, but only the Opener
>     pop-up is seen.
>     imp = IJ.openImage("http://imagej.nih.gov/ij/images/boats.gif");
>     imp.show();
>
>     I went back to version 1.47, but it still happens there (it has been
>     happening for a while, but I finally am getting around to asking).
>     I am running Fiji, so I tried to deselect the bio-formats update
>     site.
>     but a strange this happened -- no files  were listed to remove,
>     and the
>     updater offered no changes regardless of whether that site was
>     selected
>     or not.
>
>     tnx in advance for any ideas about this.
>     --aryeh
>
>     --
>     Aryeh Weiss
>     Faculty of Engineering
>     Bar Ilan University
>     Ramat Gan 52900 Israel
>
>     Ph:  972-3-5317638
>     FAX: 972-3-7384051
>
>
>     --
>     ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

--
Aryeh Weiss
Faculty of Engineering
Bar Ilan University
Ramat Gan 52900 Israel

Ph:  972-3-5317638
FAX: 972-3-7384051


--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html