marker-controlled watershed segmentation using MorphoLibJ

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marker-controlled watershed segmentation using MorphoLibJ

ChenX
Dear all,

I am following a thread doing marker-controlled watershed segmentation using
MorphoLibJ plugin.
I wonder how to turn the segmented areas into ROIs which I can apply on the
original image and do some measurement such as intensity, area, ellipse and
so on. To be more specific, for example, I would like to use Analyze
Particles function on the segmented image, how to proceed?

Thanks!
Xing



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Re: marker-controlled watershed segmentation using MorphoLibJ

Ignacio Arganda-Carreras-2
Dear Xing,

Once you have the results from MorphoLibJ's watershed plugins, you can use
that image (called "label image") to obtain those measurements using the
plugins under "Plugins > MorphoLibJ > Analyze".

Cheers!

ignacio

On Wed, Nov 21, 2018 at 3:55 PM ChenX <[hidden email]> wrote:

> Dear all,
>
> I am following a thread doing marker-controlled watershed segmentation
> using
> MorphoLibJ plugin.
> I wonder how to turn the segmented areas into ROIs which I can apply on the
> original image and do some measurement such as intensity, area, ellipse and
> so on. To be more specific, for example, I would like to use Analyze
> Particles function on the segmented image, how to proceed?
>
> Thanks!
> Xing
>
>
>
> --
> Sent from: http://imagej.1557.x6.nabble.com/
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>


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Ignacio Arganda-Carreras, Ph.D.
Ikerbasque Research Fellow
Departamento de Ciencia de la Computacion e Inteligencia Artificial
Facultad de Informatica, Universidad del Pais Vasco
Paseo de Manuel Lardizabal, 1
20018 Donostia-San Sebastian
Guipuzcoa, Spain

Phone : +34 943 01 73 25
Website: http://sites.google.com/site/iargandacarreras/

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