Quantcast

SlideJ - a plugin for automated processing of WSI

Previous Topic Next Topic
 
classic Classic list List threaded Threaded
2 messages Options
Reply | Threaded
Open this post in threaded view
|  
Report Content as Inappropriate

SlideJ - a plugin for automated processing of WSI

Vincenzo Della Mea-3
Dear all,
it's years since my last contribution. I am back here to introduce SlideJ, a basic plugin that allows to process Whole Slide Images (aka digital slides), by splitting them in configurable tiles using Bio-formats and applying to each tile a user configurable macro. It's like the batch macro execution, but for digital slides.

Code and some macro examples here:
https://github.com/MITEL-UNIUD/SlideJ

Kind regards,
Vincenzo

* Vincenzo Della Mea
* Medical Informatics, Telemedicine and Ehealth Lab
* Dept. of Mathematics and Computer Science
* University of Udine, Italy
* http://www.dimi.uniud.it/dellamea/ - http://mitel.dimi.uniud.it/  -  http://www.eslide.net
* WHO Italian Collaborating Centre for the Family of International Classifications





--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html
Reply | Threaded
Open this post in threaded view
|  
Report Content as Inappropriate

Re: SlideJ - a plugin for automated processing of WSI

ctrueden
Hi Vincenzo,

Very cool. Have you considered documenting this plugin on the ImageJ wiki
at https://imagej.net/SlideJ ?

See also https://imagej.net/Distribution

Regards,
Curtis

--
Curtis Rueden
LOCI software architect - https://loci.wisc.edu/software
ImageJ2 lead, Fiji maintainer - https://imagej.net/User:Rueden
Did you know ImageJ has a forum? http://forum.imagej.net/


On Thu, May 11, 2017 at 3:12 AM, Vincenzo Della Mea <
[hidden email]> wrote:

> Dear all,
> it's years since my last contribution. I am back here to introduce SlideJ,
> a basic plugin that allows to process Whole Slide Images (aka digital
> slides), by splitting them in configurable tiles using Bio-formats and
> applying to each tile a user configurable macro. It's like the batch macro
> execution, but for digital slides.
>
> Code and some macro examples here:
> https://github.com/MITEL-UNIUD/SlideJ
>
> Kind regards,
> Vincenzo
>
> * Vincenzo Della Mea
> * Medical Informatics, Telemedicine and Ehealth Lab
> * Dept. of Mathematics and Computer Science
> * University of Udine, Italy
> * http://www.dimi.uniud.it/dellamea/ - http://mitel.dimi.uniud.it/  -
> http://www.eslide.net
> * WHO Italian Collaborating Centre for the Family of International
> Classifications
>
>
>
>
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html
Loading...