Re:Exception Error on 'MorphologicalSegmentation' Plugin Execution from Macro

Previous Topic Next Topic
 
classic Classic list List threaded Threaded
7 messages Options
GP
Reply | Threaded
Open this post in threaded view
|  
Report Content as Inappropriate

Re:Exception Error on 'MorphologicalSegmentation' Plugin Execution from Macro

GP
Hie!

On normal execution of 'Morphological Segmentation' plugin from 'MorphoLibJ' works fine but on execution via macro with exact same settings leads to the following two exception error windows:

1) Exception Error Window:
(Fiji Is Just) ImageJ 2.0.0-rc-61/1.51p; Java 1.8.0_66 [64-bit]; Mac OS X 10.12.5; 62MB of 2854MB (2%)
 
java.lang.reflect.InvocationTargetException
        at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
        at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
        at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
        at java.lang.reflect.Method.invoke(Method.java:497)
        at ij.macro.Functions.call(Functions.java:4131)
        at ij.macro.Functions.getStringFunction(Functions.java:272)
        at ij.macro.Interpreter.getStringTerm(Interpreter.java:1307)
        at ij.macro.Interpreter.getString(Interpreter.java:1286)
        at ij.macro.Interpreter.doStatement(Interpreter.java:294)
        at ij.macro.Interpreter.doStatements(Interpreter.java:231)
        at ij.macro.Interpreter.run(Interpreter.java:115)
        at ij.macro.Interpreter.run(Interpreter.java:86)
        at ij.macro.Interpreter.run(Interpreter.java:97)
        at ij.plugin.Macro_Runner.runMacro(Macro_Runner.java:155)
        at ij.IJ.runMacro(IJ.java:134)
        at ij.IJ.runMacro(IJ.java:123)
        at net.imagej.legacy.IJ1Helper$3.call(IJ1Helper.java:1052)
        at net.imagej.legacy.IJ1Helper$3.call(IJ1Helper.java:1048)
        at net.imagej.legacy.IJ1Helper.runMacroFriendly(IJ1Helper.java:999)
        at net.imagej.legacy.IJ1Helper.runMacro(IJ1Helper.java:1048)
        at net.imagej.legacy.plugin.IJ1MacroEngine.eval(IJ1MacroEngine.java:136)
        at org.scijava.script.ScriptModule.run(ScriptModule.java:159)
        at org.scijava.module.ModuleRunner.run(ModuleRunner.java:167)
        at org.scijava.module.ModuleRunner.call(ModuleRunner.java:126)
        at org.scijava.module.ModuleRunner.call(ModuleRunner.java:65)
        at org.scijava.thread.DefaultThreadService$3.call(DefaultThreadService.java:237)
        at java.util.concurrent.FutureTask.run(FutureTask.java:266)
        at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
        at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
        at java.lang.Thread.run(Thread.java:745)
Caused by: java.lang.NullPointerException
        at inra.ijpb.plugins.MorphologicalSegmentation$CustomWindow.getResultDisplayOption(MorphologicalSegmentation.java:1450)
        at inra.ijpb.plugins.MorphologicalSegmentation.createResultImage(MorphologicalSegmentation.java:1763)
        ... 30 more


2) Exception Error Window:
(Fiji Is Just) ImageJ 2.0.0-rc-61/1.51p; Java 1.8.0_66 [64-bit]; Mac OS X 10.12.5; 61MB of 2854MB (2%)
 
java.lang.reflect.InvocationTargetException
        at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
        at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
        at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
        at java.lang.reflect.Method.invoke(Method.java:497)
        at ij.macro.Functions.call(Functions.java:4131)
        at ij.macro.Functions.getStringFunction(Functions.java:272)
        at ij.macro.Interpreter.getStringTerm(Interpreter.java:1307)
        at ij.macro.Interpreter.getString(Interpreter.java:1286)
        at ij.macro.Interpreter.doStatement(Interpreter.java:294)
        at ij.macro.Interpreter.doStatements(Interpreter.java:231)
        at ij.macro.Interpreter.run(Interpreter.java:115)
        at ij.macro.Interpreter.run(Interpreter.java:86)
        at ij.macro.Interpreter.run(Interpreter.java:97)
        at ij.plugin.Macro_Runner.runMacro(Macro_Runner.java:155)
        at ij.IJ.runMacro(IJ.java:134)
        at ij.IJ.runMacro(IJ.java:123)
        at net.imagej.legacy.IJ1Helper$3.call(IJ1Helper.java:1052)
        at net.imagej.legacy.IJ1Helper$3.call(IJ1Helper.java:1048)
        at net.imagej.legacy.IJ1Helper.runMacroFriendly(IJ1Helper.java:999)
        at net.imagej.legacy.IJ1Helper.runMacro(IJ1Helper.java:1048)
        at net.imagej.legacy.plugin.IJ1MacroEngine.eval(IJ1MacroEngine.java:136)
        at org.scijava.script.ScriptModule.run(ScriptModule.java:159)
        at org.scijava.module.ModuleRunner.run(ModuleRunner.java:167)
        at org.scijava.module.ModuleRunner.call(ModuleRunner.java:126)
        at org.scijava.module.ModuleRunner.call(ModuleRunner.java:65)
        at org.scijava.thread.DefaultThreadService$3.call(DefaultThreadService.java:237)
        at java.util.concurrent.FutureTask.run(FutureTask.java:266)
        at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
        at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
        at java.lang.Thread.run(Thread.java:745)
Caused by: java.lang.NullPointerException
        at inra.ijpb.plugins.MorphologicalSegmentation$CustomWindow.setResultDisplayOption(MorphologicalSegmentation.java:1441)
        at inra.ijpb.plugins.MorphologicalSegmentation.setDisplayFormat(MorphologicalSegmentation.java:1829)
        ... 30 more


And following message is displayed in the log window:
Error: Morphological Segmentation GUI not detected

Macro code used is as follows:

run("Morphological Segmentation");
call("inra.ijpb.plugins.MorphologicalSegmentation.setInputImageType", "object");
call("inra.ijpb.plugins.MorphologicalSegmentation.setGradientRadius", "1");
call("inra.ijpb.plugins.MorphologicalSegmentation.segment", "tolerance=10", "calculateDams=true", "connectivity=4");
call("inra.ijpb.plugins.MorphologicalSegmentation.setDisplayFormat", "Catchment basins");
call("inra.ijpb.plugins.MorphologicalSegmentation.createResultImage");

Thank you so much for your help.
Best Regards,


Reply | Threaded
Open this post in threaded view
|  
Report Content as Inappropriate

Re: Exception Error on 'MorphologicalSegmentation' Plugin Execution from Macro

Ignacio Arganda-Carreras-2
Hello there,

You need to add a wait in your macro after calling the plugin so the GUI
has time to get loaded. Have a look at the example in the wiki (line 6):
https://imagej.net/Morphological_Segmentation#Complete_macro_example:

Cheers!

On Wed, Jun 28, 2017 at 12:43 AM, GP <[hidden email]> wrote:

> Hie!
>
> On normal execution of 'Morphological Segmentation' plugin from
> 'MorphoLibJ'
> works fine but on execution via macro with exact same settings leads to the
> following two exception error windows:
>
> 1) Exception Error Window:
> (Fiji Is Just) ImageJ 2.0.0-rc-61/1.51p; Java 1.8.0_66 [64-bit]; Mac OS X
> 10.12.5; 62MB of 2854MB (2%)
>
> java.lang.reflect.InvocationTargetException
>         at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
>         at
> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:
> 62)
>         at
> sun.reflect.DelegatingMethodAccessorImpl.invoke(
> DelegatingMethodAccessorImpl.java:43)
>         at java.lang.reflect.Method.invoke(Method.java:497)
>         at ij.macro.Functions.call(Functions.java:4131)
>         at ij.macro.Functions.getStringFunction(Functions.java:272)
>         at ij.macro.Interpreter.getStringTerm(Interpreter.java:1307)
>         at ij.macro.Interpreter.getString(Interpreter.java:1286)
>         at ij.macro.Interpreter.doStatement(Interpreter.java:294)
>         at ij.macro.Interpreter.doStatements(Interpreter.java:231)
>         at ij.macro.Interpreter.run(Interpreter.java:115)
>         at ij.macro.Interpreter.run(Interpreter.java:86)
>         at ij.macro.Interpreter.run(Interpreter.java:97)
>         at ij.plugin.Macro_Runner.runMacro(Macro_Runner.java:155)
>         at ij.IJ.runMacro(IJ.java:134)
>         at ij.IJ.runMacro(IJ.java:123)
>         at net.imagej.legacy.IJ1Helper$3.call(IJ1Helper.java:1052)
>         at net.imagej.legacy.IJ1Helper$3.call(IJ1Helper.java:1048)
>         at net.imagej.legacy.IJ1Helper.runMacroFriendly(IJ1Helper.
> java:999)
>         at net.imagej.legacy.IJ1Helper.runMacro(IJ1Helper.java:1048)
>         at net.imagej.legacy.plugin.IJ1MacroEngine.eval(
> IJ1MacroEngine.java:136)
>         at org.scijava.script.ScriptModule.run(ScriptModule.java:159)
>         at org.scijava.module.ModuleRunner.run(ModuleRunner.java:167)
>         at org.scijava.module.ModuleRunner.call(ModuleRunner.java:126)
>         at org.scijava.module.ModuleRunner.call(ModuleRunner.java:65)
>         at
> org.scijava.thread.DefaultThreadService$3.call(
> DefaultThreadService.java:237)
>         at java.util.concurrent.FutureTask.run(FutureTask.java:266)
>         at
> java.util.concurrent.ThreadPoolExecutor.runWorker(
> ThreadPoolExecutor.java:1142)
>         at
> java.util.concurrent.ThreadPoolExecutor$Worker.run(
> ThreadPoolExecutor.java:617)
>         at java.lang.Thread.run(Thread.java:745)
> Caused by: java.lang.NullPointerException
>         at
> inra.ijpb.plugins.MorphologicalSegmentation$CustomWindow.
> getResultDisplayOption(MorphologicalSegmentation.java:1450)
>         at
> inra.ijpb.plugins.MorphologicalSegmentation.createResultImage(
> MorphologicalSegmentation.java:1763)
>         ... 30 more
>
>
> 2) Exception Error Window:
> (Fiji Is Just) ImageJ 2.0.0-rc-61/1.51p; Java 1.8.0_66 [64-bit]; Mac OS X
> 10.12.5; 61MB of 2854MB (2%)
>
> java.lang.reflect.InvocationTargetException
>         at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
>         at
> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:
> 62)
>         at
> sun.reflect.DelegatingMethodAccessorImpl.invoke(
> DelegatingMethodAccessorImpl.java:43)
>         at java.lang.reflect.Method.invoke(Method.java:497)
>         at ij.macro.Functions.call(Functions.java:4131)
>         at ij.macro.Functions.getStringFunction(Functions.java:272)
>         at ij.macro.Interpreter.getStringTerm(Interpreter.java:1307)
>         at ij.macro.Interpreter.getString(Interpreter.java:1286)
>         at ij.macro.Interpreter.doStatement(Interpreter.java:294)
>         at ij.macro.Interpreter.doStatements(Interpreter.java:231)
>         at ij.macro.Interpreter.run(Interpreter.java:115)
>         at ij.macro.Interpreter.run(Interpreter.java:86)
>         at ij.macro.Interpreter.run(Interpreter.java:97)
>         at ij.plugin.Macro_Runner.runMacro(Macro_Runner.java:155)
>         at ij.IJ.runMacro(IJ.java:134)
>         at ij.IJ.runMacro(IJ.java:123)
>         at net.imagej.legacy.IJ1Helper$3.call(IJ1Helper.java:1052)
>         at net.imagej.legacy.IJ1Helper$3.call(IJ1Helper.java:1048)
>         at net.imagej.legacy.IJ1Helper.runMacroFriendly(IJ1Helper.
> java:999)
>         at net.imagej.legacy.IJ1Helper.runMacro(IJ1Helper.java:1048)
>         at net.imagej.legacy.plugin.IJ1MacroEngine.eval(
> IJ1MacroEngine.java:136)
>         at org.scijava.script.ScriptModule.run(ScriptModule.java:159)
>         at org.scijava.module.ModuleRunner.run(ModuleRunner.java:167)
>         at org.scijava.module.ModuleRunner.call(ModuleRunner.java:126)
>         at org.scijava.module.ModuleRunner.call(ModuleRunner.java:65)
>         at
> org.scijava.thread.DefaultThreadService$3.call(
> DefaultThreadService.java:237)
>         at java.util.concurrent.FutureTask.run(FutureTask.java:266)
>         at
> java.util.concurrent.ThreadPoolExecutor.runWorker(
> ThreadPoolExecutor.java:1142)
>         at
> java.util.concurrent.ThreadPoolExecutor$Worker.run(
> ThreadPoolExecutor.java:617)
>         at java.lang.Thread.run(Thread.java:745)
> Caused by: java.lang.NullPointerException
>         at
> inra.ijpb.plugins.MorphologicalSegmentation$CustomWindow.
> setResultDisplayOption(MorphologicalSegmentation.java:1441)
>         at
> inra.ijpb.plugins.MorphologicalSegmentation.setDisplayFormat(
> MorphologicalSegmentation.java:1829)
>         ... 30 more
>
>
> And following message is displayed in the log window:
> Error: Morphological Segmentation GUI not detected
>
> Macro code used is as follows:
>
> run("Morphological Segmentation");
> call("inra.ijpb.plugins.MorphologicalSegmentation.setInputImageType",
> "object");
> call("inra.ijpb.plugins.MorphologicalSegmentation.setGradientRadius",
> "1");
> call("inra.ijpb.plugins.MorphologicalSegmentation.segment",
> "tolerance=10",
> "calculateDams=true", "connectivity=4");
> call("inra.ijpb.plugins.MorphologicalSegmentation.setDisplayFormat",
> "Catchment basins");
> call("inra.ijpb.plugins.MorphologicalSegmentation.createResultImage");
>
> Thank you so much for your help.
> Best Regards,
>
>
>
>
>
>
> --
> View this message in context: http://imagej.1557.x6.nabble.
> com/Re-Exception-Error-on-MorphologicalSegmentation-
> Plugin-Execution-from-Macro-tp5018975.html
> Sent from the ImageJ mailing list archive at Nabble.com.
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>



--
Ignacio Arganda-Carreras, Ph.D.
Ikerbasque Research Fellow
Departamento de Ciencia de la Computacion e Inteligencia Artificial
Facultad de Informatica, Universidad del Pais Vasco
Paseo de Manuel Lardizabal, 1
20018 Donostia-San Sebastian
Guipuzcoa, Spain

Phone : +34 943 01 73 25
Website: http://sites.google.com/site/iargandacarreras/
<http://biocomp.cnb.csic.es/~iarganda/index_EN.html>

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html
GP
Reply | Threaded
Open this post in threaded view
|  
Report Content as Inappropriate

Re: Exception Error on 'MorphologicalSegmentation' Plugin Execution from Macro

GP
Hie!

Thank you so much!
adding wait() solved the problem.

Best Regards,

On Wed, Jun 28, 2017 at 7:46 AM, Ignacio Arganda-Carreras-2 [via ImageJ] <[hidden email]> wrote:
Hello there,

You need to add a wait in your macro after calling the plugin so the GUI
has time to get loaded. Have a look at the example in the wiki (line 6):
https://imagej.net/Morphological_Segmentation#Complete_macro_example:

Cheers!

On Wed, Jun 28, 2017 at 12:43 AM, GP <[hidden email]> wrote:

> Hie!
>
> On normal execution of 'Morphological Segmentation' plugin from
> 'MorphoLibJ'
> works fine but on execution via macro with exact same settings leads to the
> following two exception error windows:
>
> 1) Exception Error Window:
> (Fiji Is Just) ImageJ 2.0.0-rc-61/1.51p; Java 1.8.0_66 [64-bit]; Mac OS X
> 10.12.5; 62MB of 2854MB (2%)
>
> java.lang.reflect.InvocationTargetException
>         at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
>         at
> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:
> 62)
>         at
> sun.reflect.DelegatingMethodAccessorImpl.invoke(
> DelegatingMethodAccessorImpl.java:43)
>         at java.lang.reflect.Method.invoke(Method.java:497)
>         at ij.macro.Functions.call(Functions.java:4131)
>         at ij.macro.Functions.getStringFunction(Functions.java:272)
>         at ij.macro.Interpreter.getStringTerm(Interpreter.java:1307)
>         at ij.macro.Interpreter.getString(Interpreter.java:1286)
>         at ij.macro.Interpreter.doStatement(Interpreter.java:294)
>         at ij.macro.Interpreter.doStatements(Interpreter.java:231)
>         at ij.macro.Interpreter.run(Interpreter.java:115)
>         at ij.macro.Interpreter.run(Interpreter.java:86)
>         at ij.macro.Interpreter.run(Interpreter.java:97)
>         at ij.plugin.Macro_Runner.runMacro(Macro_Runner.java:155)
>         at ij.IJ.runMacro(IJ.java:134)
>         at ij.IJ.runMacro(IJ.java:123)
>         at net.imagej.legacy.IJ1Helper$3.call(IJ1Helper.java:1052)
>         at net.imagej.legacy.IJ1Helper$3.call(IJ1Helper.java:1048)
>         at net.imagej.legacy.IJ1Helper.runMacroFriendly(IJ1Helper.
> java:999)
>         at net.imagej.legacy.IJ1Helper.runMacro(IJ1Helper.java:1048)
>         at net.imagej.legacy.plugin.IJ1MacroEngine.eval(
> IJ1MacroEngine.java:136)
>         at org.scijava.script.ScriptModule.run(ScriptModule.java:159)
>         at org.scijava.module.ModuleRunner.run(ModuleRunner.java:167)
>         at org.scijava.module.ModuleRunner.call(ModuleRunner.java:126)
>         at org.scijava.module.ModuleRunner.call(ModuleRunner.java:65)
>         at
> org.scijava.thread.DefaultThreadService$3.call(
> DefaultThreadService.java:237)
>         at java.util.concurrent.FutureTask.run(FutureTask.java:266)
>         at
> java.util.concurrent.ThreadPoolExecutor.runWorker(
> ThreadPoolExecutor.java:1142)
>         at
> java.util.concurrent.ThreadPoolExecutor$Worker.run(
> ThreadPoolExecutor.java:617)
>         at java.lang.Thread.run(Thread.java:745)
> Caused by: java.lang.NullPointerException
>         at
> inra.ijpb.plugins.MorphologicalSegmentation$CustomWindow.
> getResultDisplayOption(MorphologicalSegmentation.java:1450)
>         at
> inra.ijpb.plugins.MorphologicalSegmentation.createResultImage(
> MorphologicalSegmentation.java:1763)
>         ... 30 more
>
>
> 2) Exception Error Window:
> (Fiji Is Just) ImageJ 2.0.0-rc-61/1.51p; Java 1.8.0_66 [64-bit]; Mac OS X
> 10.12.5; 61MB of 2854MB (2%)
>
> java.lang.reflect.InvocationTargetException
>         at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
>         at
> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:
> 62)
>         at
> sun.reflect.DelegatingMethodAccessorImpl.invoke(
> DelegatingMethodAccessorImpl.java:43)
>         at java.lang.reflect.Method.invoke(Method.java:497)
>         at ij.macro.Functions.call(Functions.java:4131)
>         at ij.macro.Functions.getStringFunction(Functions.java:272)
>         at ij.macro.Interpreter.getStringTerm(Interpreter.java:1307)
>         at ij.macro.Interpreter.getString(Interpreter.java:1286)
>         at ij.macro.Interpreter.doStatement(Interpreter.java:294)
>         at ij.macro.Interpreter.doStatements(Interpreter.java:231)
>         at ij.macro.Interpreter.run(Interpreter.java:115)
>         at ij.macro.Interpreter.run(Interpreter.java:86)
>         at ij.macro.Interpreter.run(Interpreter.java:97)
>         at ij.plugin.Macro_Runner.runMacro(Macro_Runner.java:155)
>         at ij.IJ.runMacro(IJ.java:134)
>         at ij.IJ.runMacro(IJ.java:123)
>         at net.imagej.legacy.IJ1Helper$3.call(IJ1Helper.java:1052)
>         at net.imagej.legacy.IJ1Helper$3.call(IJ1Helper.java:1048)
>         at net.imagej.legacy.IJ1Helper.runMacroFriendly(IJ1Helper.
> java:999)
>         at net.imagej.legacy.IJ1Helper.runMacro(IJ1Helper.java:1048)
>         at net.imagej.legacy.plugin.IJ1MacroEngine.eval(
> IJ1MacroEngine.java:136)
>         at org.scijava.script.ScriptModule.run(ScriptModule.java:159)
>         at org.scijava.module.ModuleRunner.run(ModuleRunner.java:167)
>         at org.scijava.module.ModuleRunner.call(ModuleRunner.java:126)
>         at org.scijava.module.ModuleRunner.call(ModuleRunner.java:65)
>         at
> org.scijava.thread.DefaultThreadService$3.call(
> DefaultThreadService.java:237)
>         at java.util.concurrent.FutureTask.run(FutureTask.java:266)
>         at
> java.util.concurrent.ThreadPoolExecutor.runWorker(
> ThreadPoolExecutor.java:1142)
>         at
> java.util.concurrent.ThreadPoolExecutor$Worker.run(
> ThreadPoolExecutor.java:617)
>         at java.lang.Thread.run(Thread.java:745)
> Caused by: java.lang.NullPointerException
>         at
> inra.ijpb.plugins.MorphologicalSegmentation$CustomWindow.
> setResultDisplayOption(MorphologicalSegmentation.java:1441)
>         at
> inra.ijpb.plugins.MorphologicalSegmentation.setDisplayFormat(
> MorphologicalSegmentation.java:1829)
>         ... 30 more
>
>
> And following message is displayed in the log window:
> Error: Morphological Segmentation GUI not detected
>
> Macro code used is as follows:
>
> run("Morphological Segmentation");
> call("inra.ijpb.plugins.MorphologicalSegmentation.setInputImageType",
> "object");
> call("inra.ijpb.plugins.MorphologicalSegmentation.setGradientRadius",
> "1");
> call("inra.ijpb.plugins.MorphologicalSegmentation.segment",
> "tolerance=10",
> "calculateDams=true", "connectivity=4");
> call("inra.ijpb.plugins.MorphologicalSegmentation.setDisplayFormat",
> "Catchment basins");
> call("inra.ijpb.plugins.MorphologicalSegmentation.createResultImage");
>
> Thank you so much for your help.
> Best Regards,
>
>
>
>
>
>
> --
> View this message in context: http://imagej.1557.x6.nabble.
> com/Re-Exception-Error-on-MorphologicalSegmentation-
> Plugin-Execution-from-Macro-tp5018975.html
> Sent from the ImageJ mailing list archive at Nabble.com.
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>


--
Ignacio Arganda-Carreras, Ph.D.
Ikerbasque Research Fellow
Departamento de Ciencia de la Computacion e Inteligencia Artificial
Facultad de Informatica, Universidad del Pais Vasco
Paseo de Manuel Lardizabal, 1
20018 Donostia-San Sebastian
Guipuzcoa, Spain

Phone : <a href="tel:+34%20943%2001%2073%2025" value="+34943017325" target="_blank">+34 943 01 73 25
Website: http://sites.google.com/site/iargandacarreras/
<http://biocomp.cnb.csic.es/~iarganda/index_EN.html>

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html



To unsubscribe from Re:Exception Error on 'MorphologicalSegmentation' Plugin Execution from Macro, click here.
NAML



--
Gunjan Pandey

GP
Reply | Threaded
Open this post in threaded view
|  
Report Content as Inappropriate

Re: Exception Error on 'MorphologicalSegmentation' Plugin Execution from Macro

GP
In reply to this post by Ignacio Arganda-Carreras-2
Hie!

In the macro above for some reason it always skips  'call("inra.ijpb.plugins.MorphologicalSegmentation.createResultImage");' part of the script.
I have tried adding ' selectWindow("Morphological Segmentation");  ' before it but it doesn't seem to work.

Could you please help me with this.

Thanks again!
Reply | Threaded
Open this post in threaded view
|  
Report Content as Inappropriate

Re: Exception Error on 'MorphologicalSegmentation' Plugin Execution from Macro

Ignacio Arganda-Carreras-2
Have you tried adding a wait as well before that command? Maybe the
segmentation is taking long as well.

On Thu, Jun 29, 2017 at 5:31 PM, GP <[hidden email]> wrote:

> Hie!
>
> In the macro above for some reason it always skips
> 'call("inra.ijpb.plugins.MorphologicalSegmentation.createResultImage");'
> part of the script.
> I have tried adding ' selectWindow("Morphological Segmentation");  ' before
> it but it doesn't seem to work.
>
> Could you please help me with this.
>
> Thanks again!
>
>
>
>
> --
> View this message in context: http://imagej.1557.x6.nabble.
> com/Re-Exception-Error-on-MorphologicalSegmentation-
> Plugin-Execution-from-Macro-tp5018975p5019000.html
> Sent from the ImageJ mailing list archive at Nabble.com.
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>



--
Ignacio Arganda-Carreras, Ph.D.
Ikerbasque Research Fellow
Departamento de Ciencia de la Computacion e Inteligencia Artificial
Facultad de Informatica, Universidad del Pais Vasco
Paseo de Manuel Lardizabal, 1
20018 Donostia-San Sebastian
Guipuzcoa, Spain

Phone : +34 943 01 73 25
Website: http://sites.google.com/site/iargandacarreras/
<http://biocomp.cnb.csic.es/~iarganda/index_EN.html>

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html
GP
Reply | Threaded
Open this post in threaded view
|  
Report Content as Inappropriate

Re: Exception Error on 'MorphologicalSegmentation' Plugin Execution from Macro

GP
Hie! 
Yes, I did try putting wait again as well  but it didn't work.

Best Regards,


On Fri 30. Jun 2017 at 02:00, Ignacio Arganda-Carreras-2 [via ImageJ] <[hidden email]> wrote:
Have you tried adding a wait as well before that command? Maybe the
segmentation is taking long as well.

On Thu, Jun 29, 2017 at 5:31 PM, GP <[hidden email]> wrote:

> Hie!
>
> In the macro above for some reason it always skips
> 'call("inra.ijpb.plugins.MorphologicalSegmentation.createResultImage");'
> part of the script.
> I have tried adding ' selectWindow("Morphological Segmentation");  ' before
> it but it doesn't seem to work.
>
> Could you please help me with this.
>
> Thanks again!
>
>
>
>
> --
> View this message in context: http://imagej.1557.x6.nabble.
> com/Re-Exception-Error-on-MorphologicalSegmentation-
> Plugin-Execution-from-Macro-tp5018975p5019000.html
> Sent from the ImageJ mailing list archive at Nabble.com.
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>



--
Ignacio Arganda-Carreras, Ph.D.
Ikerbasque Research Fellow
Departamento de Ciencia de la Computacion e Inteligencia Artificial
Facultad de Informatica, Universidad del Pais Vasco
Paseo de Manuel Lardizabal, 1
20018 Donostia-San Sebastian
Guipuzcoa, Spain

Phone : +34 943 01 73 25
Website: http://sites.google.com/site/iargandacarreras/
<http://biocomp.cnb.csic.es/~iarganda/index_EN.html>

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html


If you reply to this email, your message will be added to the discussion below:
To unsubscribe from Re:Exception Error on 'MorphologicalSegmentation' Plugin Execution from Macro, click here.
NAML
--
Gunjan Pandey

GP
Reply | Threaded
Open this post in threaded view
|  
Report Content as Inappropriate

Re: Exception Error on 'MorphologicalSegmentation' Plugin Execution from Macro

GP
In reply to this post by Ignacio Arganda-Carreras-2
Hie!
I increased the wait time before create result image step (+100) than initial step and now it executes all steps.
Best Regards,

On Fri 30. Jun 2017 at 07:21, Gunjan Pandey <[hidden email]> wrote:
Hie! 
Yes, I did try putting wait again as well  but it didn't work.

Best Regards,


On Fri 30. Jun 2017 at 02:00, Ignacio Arganda-Carreras-2 [via ImageJ] <[hidden email]> wrote:
Have you tried adding a wait as well before that command? Maybe the
segmentation is taking long as well.

On Thu, Jun 29, 2017 at 5:31 PM, GP <[hidden email]> wrote:

> Hie!
>
> In the macro above for some reason it always skips
> 'call("inra.ijpb.plugins.MorphologicalSegmentation.createResultImage");'
> part of the script.
> I have tried adding ' selectWindow("Morphological Segmentation");  ' before
> it but it doesn't seem to work.
>
> Could you please help me with this.
>
> Thanks again!
>
>
>
>
> --
> View this message in context: http://imagej.1557.x6.nabble.
> com/Re-Exception-Error-on-MorphologicalSegmentation-
> Plugin-Execution-from-Macro-tp5018975p5019000.html
> Sent from the ImageJ mailing list archive at Nabble.com.
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>



--
Ignacio Arganda-Carreras, Ph.D.
Ikerbasque Research Fellow
Departamento de Ciencia de la Computacion e Inteligencia Artificial
Facultad de Informatica, Universidad del Pais Vasco
Paseo de Manuel Lardizabal, 1
20018 Donostia-San Sebastian
Guipuzcoa, Spain

Phone : <a href="tel:+34%20943%2001%2073%2025" value="+34943017325" target="_blank">+34 943 01 73 25
Website: http://sites.google.com/site/iargandacarreras/
<http://biocomp.cnb.csic.es/~iarganda/index_EN.html>

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html


If you reply to this email, your message will be added to the discussion below:
To unsubscribe from Re:Exception Error on 'MorphologicalSegmentation' Plugin Execution from Macro, click here.
NAML
--
Gunjan Pandey

Loading...