PeakFindertool

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PeakFindertool

Houssin, Nathalie Samantha Laetitia
Hi all,

I am trying to install this plugin to ImageJ (version 1.52) for analyzing the distribution of a protein on my images
https://sils.fnwi.uva.nl/bcb/objectj/examples/PeakFinder/peakfinder.html
After saving the macro in the plugin folder (https://sils.fnwi.uva.nl/bcb/objectj/examples/PeakFinder/PeakFinderTool.txt), I have installed it.
Although, I have a message that the plugin has been successfully installed and after restarting the software, I can't find the tool anywhere in the options listed in the different the tabs (Analyze or Plugins)

Could you give me some advice on how to run this plugin ? (it seems that I miss something in the installation steps)

Thank you for your time and help,

Nathalie


Nathalie HOUSSIN, PhD

Ohio Sate University - Optometry Department
Plageman's Lab
Fry Hall room 341C
338 W 10th avenue
Columbus, Ohio 43210
Tel: 614-292-0636




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Re: PeakFindertool

CARL Philippe (LBP)
Dear Nathalie,
By copying the PeakFinderTool.txt file (https://sils.fnwi.uva.nl/bcb/objectj/examples/PeakFinder/PeakFinderTool.txt) in the ImageJ\macros\toolsets\ folder, you will find PeakFinderTool as a new choice within the ImageJ toolsets (i.e. by clicking on >> on the right of the button menu).
My best regards,
Philippe

Le Jeudi 11 Avril 2019 18:31 CEST, "Houssin, Nathalie Samantha Laetitia" <[hidden email]> a écrit:

> Hi all,
>
> I am trying to install this plugin to ImageJ (version 1.52) for analyzing the distribution of a protein on my images
> https://sils.fnwi.uva.nl/bcb/objectj/examples/PeakFinder/peakfinder.html
> After saving the macro in the plugin folder (https://sils.fnwi.uva.nl/bcb/objectj/examples/PeakFinder/PeakFinderTool.txt), I have installed it.
> Although, I have a message that the plugin has been successfully installed and after restarting the software, I can't find the tool anywhere in the options listed in the different the tabs (Analyze or Plugins)
>
> Could you give me some advice on how to run this plugin ? (it seems that I miss something in the installation steps)
>
> Thank you for your time and help,
>
> Nathalie
>
>
> Nathalie HOUSSIN, PhD
>
> Ohio Sate University - Optometry Department
> Plageman's Lab
> Fry Hall room 341C
> 338 W 10th avenue
> Columbus, Ohio 43210
> Tel: 614-292-0636
>
>
>
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html





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Re: PeakFindertool

Straub, Volko A. (Dr.)
In reply to this post by Houssin, Nathalie Samantha Laetitia
Hi Nathalie,

The PeakFinderTool is a macro rather than a plugin. In order to install a macro, go to 'Plugins->Macros->Install' and locate the PeakFinderTool file that you downloaded. When you click 'Open', the macro will be installed and a button will be added to the right of the ImageJ menu bar. You will also find some extra items added to the 'Plugins->Macros' menu relating to the PeakFinderTool.

Alternatively, you can drop the PeakFinderTool file into the 'macros/toolsets' folder within your ImageJ directory. You can then start the macro by clicking on the button with the two arrows pointing to the right (>>; on right side of ImageJ menu bar) and select the PeakFinderTool from the drop-down list.

Hope this helps,
Volko



-----Original Message-----
From: ImageJ Interest Group [mailto:[hidden email]] On Behalf Of Houssin, Nathalie Samantha Laetitia
Sent: 11 April 2019 17:32
To: [hidden email]
Subject: PeakFindertool

Hi all,

I am trying to install this plugin to ImageJ (version 1.52) for analyzing the distribution of a protein on my images
https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fsils.fnwi.uva.nl%2Fbcb%2Fobjectj%2Fexamples%2FPeakFinder%2Fpeakfinder.html&amp;data=02%7C01%7Cvs64%40leicester.ac.uk%7C8babfca5cb2f4acc7f3808d6be9b541b%7Caebecd6a31d44b0195ce8274afe853d9%7C0%7C1%7C636905971674351799&amp;sdata=I04u%2FNfVZM%2BKb0fQGdQFGt%2FmxjiiukMcsdl7lPz%2F3vw%3D&amp;reserved=0
After saving the macro in the plugin folder (https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fsils.fnwi.uva.nl%2Fbcb%2Fobjectj%2Fexamples%2FPeakFinder%2FPeakFinderTool.txt&amp;data=02%7C01%7Cvs64%40leicester.ac.uk%7C8babfca5cb2f4acc7f3808d6be9b541b%7Caebecd6a31d44b0195ce8274afe853d9%7C0%7C1%7C636905971674351799&amp;sdata=i68xD%2Fw3IYjIhol%2ByO42oVdMAIVsLyhow2YExghKfS8%3D&amp;reserved=0), I have installed it.
Although, I have a message that the plugin has been successfully installed and after restarting the software, I can't find the tool anywhere in the options listed in the different the tabs (Analyze or Plugins)

Could you give me some advice on how to run this plugin ? (it seems that I miss something in the installation steps)

Thank you for your time and help,

Nathalie


Nathalie HOUSSIN, PhD

Ohio Sate University - Optometry Department Plageman's Lab Fry Hall room 341C
338 W 10th avenue
Columbus, Ohio 43210
Tel: 614-292-0636




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ImageJ mailing list: https://eur03.safelinks.protection.outlook.com/?url=http%3A%2F%2Fimagej.nih.gov%2Fij%2Flist.html&amp;data=02%7C01%7Cvs64%40leicester.ac.uk%7C8babfca5cb2f4acc7f3808d6be9b541b%7Caebecd6a31d44b0195ce8274afe853d9%7C0%7C1%7C636905971674351799&amp;sdata=nwp%2BWON9MGudVpnD%2BvOaHQjGkQoPcyf0ax%2FBMi2Tkw8%3D&amp;reserved=0

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Re: PeakFindertool

Houssin, Nathalie Samantha Laetitia
In reply to this post by CARL Philippe (LBP)
Dear Philippe,
Thank you very much for the detailed explanations.
It is working as expected,

Best regards,

Nathalie

-----Original Message-----
From: ImageJ Interest Group [mailto:[hidden email]] On Behalf Of CARL Philippe (LBP)
Sent: Thursday, April 11, 2019 8:04 PM
To: [hidden email]
Subject: Re: PeakFindertool

Dear Nathalie,
By copying the PeakFinderTool.txt file (https://sils.fnwi.uva.nl/bcb/objectj/examples/PeakFinder/PeakFinderTool.txt) in the ImageJ\macros\toolsets\ folder, you will find PeakFinderTool as a new choice within the ImageJ toolsets (i.e. by clicking on >> on the right of the button menu).
My best regards,
Philippe
 
Le Jeudi 11 Avril 2019 18:31 CEST, "Houssin, Nathalie Samantha Laetitia" <[hidden email]> a écrit:
 

> Hi all,
>
> I am trying to install this plugin to ImageJ (version 1.52) for
> analyzing the distribution of a protein on my images
> https://sils.fnwi.uva.nl/bcb/objectj/examples/PeakFinder/peakfinder.ht
> ml After saving the macro in the plugin folder
> (https://sils.fnwi.uva.nl/bcb/objectj/examples/PeakFinder/PeakFinderTool.txt), I have installed it.
> Although, I have a message that the plugin has been successfully
> installed and after restarting the software, I can't find the tool
> anywhere in the options listed in the different the tabs (Analyze or
> Plugins)
>
> Could you give me some advice on how to run this plugin ? (it seems
> that I miss something in the installation steps)
>
> Thank you for your time and help,
>
> Nathalie
>
>
> Nathalie HOUSSIN, PhD
>
> Ohio Sate University - Optometry Department Plageman's Lab Fry Hall
> room 341C
> 338 W 10th avenue
> Columbus, Ohio 43210
> Tel: 614-292-0636
>
>
>
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
 
 
 
 

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Re: PeakFindertool

Houssin, Nathalie Samantha Laetitia
In reply to this post by Straub, Volko A. (Dr.)
Thank you Volko for giving me further explanations on the subtleties of ImageJ semantics. It definitely helps !
I have been able to install the macro

Bests,

Nathalie

-----Original Message-----
From: Straub, Volko A. (Dr.) [mailto:[hidden email]]
Sent: Friday, April 12, 2019 4:04 AM
To: [hidden email]
Subject: Re: PeakFindertool

Hi Nathalie,

The PeakFinderTool is a macro rather than a plugin. In order to install a macro, go to 'Plugins->Macros->Install' and locate the PeakFinderTool file that you downloaded. When you click 'Open', the macro will be installed and a button will be added to the right of the ImageJ menu bar. You will also find some extra items added to the 'Plugins->Macros' menu relating to the PeakFinderTool.

Alternatively, you can drop the PeakFinderTool file into the 'macros/toolsets' folder within your ImageJ directory. You can then start the macro by clicking on the button with the two arrows pointing to the right (>>; on right side of ImageJ menu bar) and select the PeakFinderTool from the drop-down list.

Hope this helps,
Volko



-----Original Message-----
From: ImageJ Interest Group [mailto:[hidden email]] On Behalf Of Houssin, Nathalie Samantha Laetitia
Sent: 11 April 2019 17:32
To: [hidden email]
Subject: PeakFindertool

Hi all,

I am trying to install this plugin to ImageJ (version 1.52) for analyzing the distribution of a protein on my images
https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fsils.fnwi.uva.nl%2Fbcb%2Fobjectj%2Fexamples%2FPeakFinder%2Fpeakfinder.html&amp;data=02%7C01%7Cvs64%40leicester.ac.uk%7C8babfca5cb2f4acc7f3808d6be9b541b%7Caebecd6a31d44b0195ce8274afe853d9%7C0%7C1%7C636905971674351799&amp;sdata=I04u%2FNfVZM%2BKb0fQGdQFGt%2FmxjiiukMcsdl7lPz%2F3vw%3D&amp;reserved=0
After saving the macro in the plugin folder (https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fsils.fnwi.uva.nl%2Fbcb%2Fobjectj%2Fexamples%2FPeakFinder%2FPeakFinderTool.txt&amp;data=02%7C01%7Cvs64%40leicester.ac.uk%7C8babfca5cb2f4acc7f3808d6be9b541b%7Caebecd6a31d44b0195ce8274afe853d9%7C0%7C1%7C636905971674351799&amp;sdata=i68xD%2Fw3IYjIhol%2ByO42oVdMAIVsLyhow2YExghKfS8%3D&amp;reserved=0), I have installed it.
Although, I have a message that the plugin has been successfully installed and after restarting the software, I can't find the tool anywhere in the options listed in the different the tabs (Analyze or Plugins)

Could you give me some advice on how to run this plugin ? (it seems that I miss something in the installation steps)

Thank you for your time and help,

Nathalie


Nathalie HOUSSIN, PhD

Ohio Sate University - Optometry Department Plageman's Lab Fry Hall room 341C
338 W 10th avenue
Columbus, Ohio 43210
Tel: 614-292-0636




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ImageJ mailing list: https://eur03.safelinks.protection.outlook.com/?url=http%3A%2F%2Fimagej.nih.gov%2Fij%2Flist.html&amp;data=02%7C01%7Cvs64%40leicester.ac.uk%7C8babfca5cb2f4acc7f3808d6be9b541b%7Caebecd6a31d44b0195ce8274afe853d9%7C0%7C1%7C636905971674351799&amp;sdata=nwp%2BWON9MGudVpnD%2BvOaHQjGkQoPcyf0ax%2FBMi2Tkw8%3D&amp;reserved=0

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