LSM Reader Pluggin

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LSM Reader Pluggin

Raad Nashmi
Dear Group,

I have been able to open Zeiss LSM files previously using the LSM Reader
pluggin on ImageJ version 1.34f.  The operating system I am using is Gentoo
Linux.  

Recently, when I upgraded to ImageJ version 1.34s, ImageJ can no longer open
Zeiss LSM files using the LSM Reader pluggin.  See error message below.  
Otherwise, ImageJ seems to be working OK.  It opens other file types fine.  
There appears to be an incompatibility with LSM Reader pluggin and the new
ImageJ version.

Has anyone else experienced this problem?  How can I fix it?

Thanks.

Raad


--
Raad Nashmi    PhD
Post-doctoral Scholar
California Institute of Technology
Division of Biology, M/C156-29
1200 E. California Blvd
Pasadena, CA, 91125
phone 626-395-6063
fax 626-564-8709
email  [hidden email]


Error Message when opening a Zeiss LSM file:

Exception in thread "AWT-EventQueue-0" java.lang.IllegalAccessError: tried to
access method
ij.io.FileOpener.decodeDescriptionString()Ljava/util/Properties; from class
LSM_Reader$LSM_Reader_
        at LSM_Reader$LSM_Reader_.setCalibration(LSM_Reader.java:2545)
        at LSM_Reader$LSM_Reader_.open(LSM_Reader.java:2515)
        at LSM_Reader$LSM_Reader_.OpenLSM(LSM_Reader.java:1513)
        at LSM_Reader$5.actionPerformed(LSM_Reader.java:914)
        at javax.swing.AbstractButton.fireActionPerformed(Unknown Source)
        at javax.swing.AbstractButton$Handler.actionPerformed(Unknown Source)
        at javax.swing.DefaultButtonModel.fireActionPerformed(Unknown Source)
        at javax.swing.DefaultButtonModel.setPressed(Unknown Source)
        at javax.swing.plaf.basic.BasicButtonListener.mouseReleased(Unknown
Source)
        at java.awt.AWTEventMulticaster.mouseReleased(Unknown Source)
        at java.awt.Component.processMouseEvent(Unknown Source)
        at javax.swing.JComponent.processMouseEvent(Unknown Source)
        at java.awt.Component.processEvent(Unknown Source)
        at java.awt.Container.processEvent(Unknown Source)
        at java.awt.Component.dispatchEventImpl(Unknown Source)
        at java.awt.Container.dispatchEventImpl(Unknown Source)
        at java.awt.Component.dispatchEvent(Unknown Source)
        at java.awt.LightweightDispatcher.retargetMouseEvent(Unknown Source)
        at java.awt.LightweightDispatcher.processMouseEvent(Unknown Source)
        at java.awt.LightweightDispatcher.dispatchEvent(Unknown Source)
        at java.awt.Container.dispatchEventImpl(Unknown Source)
        at java.awt.Window.dispatchEventImpl(Unknown Source)
        at java.awt.Component.dispatchEvent(Unknown Source)
        at java.awt.EventQueue.dispatchEvent(Unknown Source)
        at java.awt.EventDispatchThread.pumpOneEventForHierarchy(Unknown
Source)
        at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Source)
        at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
        at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
        at java.awt.EventDispatchThread.run(Unknown Source)
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Re: LSM Reader Pluggin

Patrick Pirrotte
Dear Raad,

Unfortunately decodeDescriptionString() seems to have moved out of
"public" range. I'm looking into how to modify the LSM_Reader. I'll keep
you posted.

Patrick
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Re: LSM Reader Pluggin

Raad Nashmi
Patrick,

Thanks for looking into this.

Raad

At 10:31 AM 7/18/2005 +0200, you wrote:
>Dear Raad,
>
>Unfortunately decodeDescriptionString() seems to have moved out of
>"public" range. I'm looking into how to modify the LSM_Reader. I'll keep
>you posted.
>
>Patrick


Raad Nashmi     PhD
Post-doctoral Scholar
California Institute of Technology
Division of Biology, M/C156-29
1200 E California Blvd
Pasadena, CA, USA 91125
phone 626-395-6063
fax 626-564-8709
email: [hidden email]
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