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I have an hyperstack (1-channels, 48-slices, 14-frames) on which I would
like to apply the same Kang Li Image Stabilizer plugin
) values for all 14
Thus I choose a given slice position (the goal being to iterate this on all
14 frames) for example with:
Stack.setPosition(1, 1, 5);
I reduce the dimensionality:
run("Reduce Dimensionality...", "slices keep");
I apply the previously generated "StabRef.log" on the given reduced stack
run("Image Stabilizer Log Applier", " ");
And then I would like to replace the stabilized pictures back into the
hyperstack which is where I got stuck and didnt find any solution (even by
surfing on previous forum postings on the web).
Also I performed a reduce dimensionality before applying the previously
generated "StabRef.log" given that the Image Stabilizer plugin can only be
applied on stacks (i.e. not hyperstacks).
Is there a "good" or easy way to perform what Im looking for?
I thank you very much in advance for your ideas and hints.
My best regards,
Laboratoire de Biophotonique et Pharmacologie
UMR 7213 CNRS - Université de Strasbourg
Faculté de Pharmacie
74 route du Rhin
Tel : +33(0)3 68 85 41 84
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