Deleting a frame from Z stack

classic Classic list List threaded Threaded
6 messages Options
Reply | Threaded
Open this post in threaded view
|

Deleting a frame from Z stack

Achala Apte
Greetings,

Earlier when I wanted to delete a frame from Z stack, the below mentioned
path worked
Fiji>image>stacks>delete slice
But now it doesn't. Please let me know the reason and solution to this.

Thank You.

Regards
Achala

--
Regards

*Achala Apte*
Research Scholar
Supervisor : *Dr. Sunando Datta*
Department of Biological Sciences,
IISER Bhopal
Bhopal Bypass Road, Bhauri
Bhopal- 462066
Madhya Pradesh, India

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html
Reply | Threaded
Open this post in threaded view
|

Re: Deleting a frame from Z stack

Gabriel Landini
On Wednesday, 10 June 2020 06:17:13 BST you wrote:
> Earlier when I wanted to delete a frame from Z stack, the below mentioned
> path worked
> Fiji>image>stacks>delete slice
> But now it doesn't. Please let me know the reason and solution to this.

It works here.

Cheers

Gabriel

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html
Reply | Threaded
Open this post in threaded view
|

Re: Deleting a frame from Z stack

Michael Schmid
In reply to this post by Achala Apte
Hi Achala,

with the current daily build (1.52c22) and the 'T1 Head' (available via
File>Open Samples) sample stack I tried deleting the first, last and a
slice in between. No problem. I also tried with a virtual stack opened
via File>Import>Image Sequence and selecting 'Virtual stack'.

Maybe you have a virtual stack (created by some plugin) that does not
support deleting slices.
E.g. the virtual stack generated with Help>Examples>Javascript>Terabyte
VirtualStack does not support deleting slices.

The release notes mention a problem with deleting the last slice of a
viartual stack, fixed in 1.53b, but I don't think that this is the cause
of your problem. Nevertheless, make sure that you update ImageJ.

Michael
________________________________________________________________
On 10.06.20 07:17, Achala Apte wrote:

> Greetings,
>
> Earlier when I wanted to delete a frame from Z stack, the below mentioned
> path worked
> Fiji>image>stacks>delete slice
> But now it doesn't. Please let me know the reason and solution to this.
>
> Thank You.
>
> Regards
> Achala

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html
Reply | Threaded
Open this post in threaded view
|

Re: Deleting a frame from Z stack

Achala Apte
Hi Michael,

I got the issue.  What I have now are microscopic images of .OIR  file,
which doesn't allow deletion of slices unlike .lsm files. I was unaware of
that.
Thanks for the help.


On Wed, Jun 10, 2020 at 2:37 PM Michael Schmid <[hidden email]>
wrote:

> Hi Achala,
>
> with the current daily build (1.52c22) and the 'T1 Head' (available via
> File>Open Samples) sample stack I tried deleting the first, last and a
> slice in between. No problem. I also tried with a virtual stack opened
> via File>Import>Image Sequence and selecting 'Virtual stack'.
>
> Maybe you have a virtual stack (created by some plugin) that does not
> support deleting slices.
> E.g. the virtual stack generated with Help>Examples>Javascript>Terabyte
> VirtualStack does not support deleting slices.
>
> The release notes mention a problem with deleting the last slice of a
> viartual stack, fixed in 1.53b, but I don't think that this is the cause
> of your problem. Nevertheless, make sure that you update ImageJ.
>
> Michael
> ________________________________________________________________
> On 10.06.20 07:17, Achala Apte wrote:
> > Greetings,
> >
> > Earlier when I wanted to delete a frame from Z stack, the below mentioned
> > path worked
> > Fiji>image>stacks>delete slice
> > But now it doesn't. Please let me know the reason and solution to this.
> >
> > Thank You.
> >
> > Regards
> > Achala
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>


--
Regards

*Achala Apte*
Research Scholar
Supervisor : *Dr. Sunando Datta*
Department of Biological Sciences,
IISER Bhopal
Bhopal Bypass Road, Bhauri
Bhopal- 462066
Madhya Pradesh, India

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html
Reply | Threaded
Open this post in threaded view
|

Re: Deleting a frame from Z stack

olivier-2
In reply to this post by Achala Apte
Hello
Maybe you just need to save this stack as .tif and delete Z slice in that stack.
Have a good day.

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html
Reply | Threaded
Open this post in threaded view
|

Re: Deleting a frame from Z stack

Achala Apte
hello,
I checked it. Although a long process, it works fine.
Many Thanks.

Achala


On Thu, Jun 11, 2020 at 1:00 PM olivier <[hidden email]> wrote:

> Hello
> Maybe you just need to save this stack as .tif and delete Z slice in that
> stack.
> Have a good day.
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>


--
Regards

*Achala Apte*
Research Scholar
Supervisor : *Dr. Sunando Datta*
Department of Biological Sciences,
IISER Bhopal
Bhopal Bypass Road, Bhauri
Bhopal- 462066
Madhya Pradesh, India

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html